############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/gcatest_1.22.0.tar.gz && rm -rf gcatest.buildbin-libdir && mkdir gcatest.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcatest.buildbin-libdir gcatest_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL gcatest_1.22.0.zip && rm gcatest_1.22.0.tar.gz gcatest_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 2081k 0 16225 0 0 136k 0 0:00:15 --:--:-- 0:00:15 136k 100 2081k 100 2081k 0 0 4197k 0 --:--:-- --:--:-- --:--:-- 4197k install for i386 * installing *source* package 'gcatest' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c assoc.c -o assoc.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gcatest-init.c -o gcatest-init.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o gcatest.dll tmp.def assoc.o gcatest-init.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/gcatest.buildbin-libdir/00LOCK-gcatest/00new/gcatest/libs/i386 ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gcatest' finding HTML links ... done gcat html sim_geno html sim_trait html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'gcatest' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c assoc.c -o assoc.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gcatest-init.c -o gcatest-init.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o gcatest.dll tmp.def assoc.o gcatest-init.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/gcatest.buildbin-libdir/gcatest/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'gcatest' as gcatest_1.22.0.zip * DONE (gcatest) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'gcatest' successfully unpacked and MD5 sums checked