############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/flowViz_1.56.0.tar.gz && rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowViz.buildbin-libdir flowViz_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL flowViz_1.56.0.zip && rm flowViz_1.56.0.tar.gz flowViz_1.56.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 806k 100 806k 0 0 2575k 0 --:--:-- --:--:-- --:--:-- 2586k install for i386 * installing *source* package 'flowViz' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'densityplot' with signature 'x="formula",data="view"': no definition for class "view" in method for 'densityplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet" in method for 'densityplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList" in method for 'histogram' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet" in method for 'histogram' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList" in method for 'glines' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter" in method for 'glines' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter" in method for 'glines' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter" in method for 'glpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter" in method for 'glpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter" in method for 'glpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter" in method for 'glpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter" in method for 'gpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter" in method for 'gpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter" in method for 'gpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter" in method for 'gpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter" in method for 'xyplot' with signature 'x="formula",data="view"': no definition for class "view" in method for 'xyplot' with signature 'x="view",data="missing"': no definition for class "view" in method for 'xyplot' with signature 'x="formula",data="gateView"': no definition for class "gateView" in method for 'xyplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet" in method for 'xyplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList" ** help *** installing help indices converting help for package 'flowViz' finding HTML links ... done addName-methods html contour-methods html densityplot html dot-process_flowFrame_overlay html dot-process_overlay_flowSet html ecdfplot html flowPlot html flowViz-package html flowViz.par.get html glines-methods html glpoints-methods html glpolygon-methods html gpoints-methods html gpolygon-methods html lattice-methods html plot html splom html timeLinePlot html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/flowViz.buildbin-libdir/00LOCK-flowViz/00new/flowViz/help/timelineplot.html xyplot html ** building package indices ** installing vignettes 'filters.Rmd' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowViz' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowViz' as flowViz_1.56.0.zip * DONE (flowViz) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'flowViz' successfully unpacked and MD5 sums checked