############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/flowFP_1.50.0.tar.gz && rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowFP.buildbin-libdir flowFP_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL flowFP_1.50.0.zip && rm flowFP_1.50.0.tar.gz flowFP_1.50.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 14 4459k 14 632k 0 0 1880k 0 0:00:02 --:--:-- 0:00:02 1877k 100 4459k 100 4459k 0 0 5955k 0 --:--:-- --:--:-- --:--:-- 5953k install for i386 * installing *source* package 'flowFP' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c flowFP.c -o flowFP.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c split_utils.c -o split_utils.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o flowFP.dll tmp.def flowFP.o init.o split_utils.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowFP.buildbin-libdir/00LOCK-flowFP/00new/flowFP/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'append' from package 'base' in package 'flowFP' ** help *** installing help indices converting help for package 'flowFP' finding HTML links ... done append-methods html binBoundary-methods html counts-methods html flowFP-class html flowFP-package html flowFP html flowFPModel-class html flowFPModel html flowFPPlex-class html flowFPPlex html fs1 html fs2 html hasClasses-methods html index-methods html is.flowFP html is.flowFPModel html is.flowFPPlex html length-methods html nFeatures-methods html nInstances-methods html nRecursions-methods html name-methods html parameters-methods html plate html plot-methods html sampleClasses-methods html sampleNames-methods html show-methods html summary-methods html tags-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowFP' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c flowFP.c -o flowFP.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c split_utils.c -o split_utils.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o flowFP.dll tmp.def flowFP.o init.o split_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowFP.buildbin-libdir/flowFP/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowFP' as flowFP_1.50.0.zip * DONE (flowFP) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'flowFP' successfully unpacked and MD5 sums checked