############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/fcoex_1.6.0.tar.gz && rm -rf fcoex.buildbin-libdir && mkdir fcoex.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fcoex.buildbin-libdir fcoex_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL fcoex_1.6.0.zip && rm fcoex_1.6.0.tar.gz fcoex_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 943k 100 943k 0 0 1622k 0 --:--:-- --:--:-- --:--:-- 1626k install for i386 * installing *source* package 'fcoex' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' in method for 'mod_ora' with signature '"fcoex"': no definition for class "fcoex" ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' in method for 'mod_ora' with signature '"fcoex"': no definition for class "fcoex" ** help *** installing help indices converting help for package 'fcoex' finding HTML links ... done discretize html dot-get_correlates html fc html fcoex-class html find_cbf_modules html get_nets html idents html mini_pbmc3k html mod_colors html mod_gene_num html mod_names html mod_ora html module_genes html new_fcoex html nmodules html ora_data html plot_one_interaction html plot_ora html plot_ora_single html recluster html save_plots html show-fcoex-method html show_net html show_ora html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' ** testing if installed package can be loaded from final location Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'fcoex' ... ** testing if installed package can be loaded Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' * MD5 sums packaged installation of 'fcoex' as fcoex_1.6.0.zip * DONE (fcoex) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'fcoex' successfully unpacked and MD5 sums checked