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This page was generated on 2021-10-15 15:06:04 -0400 (Fri, 15 Oct 2021).

INSTALL results for exomeCopy on tokay2

To the developers/maintainers of the exomeCopy package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/exomeCopy.git to
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raw results

Package 604/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
exomeCopy 1.38.0  (landing page)
Michael Love
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/exomeCopy
git_branch: RELEASE_3_13
git_last_commit: 4f9c531
git_last_commit_date: 2021-05-19 11:50:34 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: exomeCopy
Version: 1.38.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/exomeCopy_1.38.0.tar.gz && rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomeCopy.buildbin-libdir exomeCopy_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL exomeCopy_1.38.0.zip && rm exomeCopy_1.38.0.tar.gz exomeCopy_1.38.0.zip
StartedAt: 2021-10-14 08:04:57 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 08:05:32 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 35.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/exomeCopy_1.38.0.tar.gz && rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomeCopy.buildbin-libdir exomeCopy_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL exomeCopy_1.38.0.zip && rm exomeCopy_1.38.0.tar.gz exomeCopy_1.38.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 80867  100 80867    0     0   510k      0 --:--:-- --:--:-- --:--:--  512k

install for i386

* installing *source* package 'exomeCopy' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c exomeCopy.c -o exomeCopy.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o exomeCopy.dll tmp.def exomeCopy.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/exomeCopy.buildbin-libdir/00LOCK-exomeCopy/00new/exomeCopy/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'exomeCopy'
    finding HTML links ... done
    ExomeCopy-class                         html  
    compileCopyCountSegments                html  
    copyCountSegments                       html  
    countBamInGRanges                       html  
    finding level-2 HTML links ... done

    exomeCopy-package                       html  
    exomeCopy                               html  
    exomecounts                             html  
    generateBackground                      html  
    getGCcontent                            html  
    negLogLike                              html  
    plot.exomeCopyObject                    html  
    plotCompiledCNV                         html  
    subdivideGRanges                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'exomeCopy' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c exomeCopy.c -o exomeCopy.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o exomeCopy.dll tmp.def exomeCopy.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/exomeCopy.buildbin-libdir/exomeCopy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'exomeCopy' as exomeCopy_1.38.0.zip
* DONE (exomeCopy)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'exomeCopy' successfully unpacked and MD5 sums checked