############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/easyRNASeq_2.28.0.tar.gz && rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyRNASeq.buildbin-libdir easyRNASeq_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.28.0.zip && rm easyRNASeq_2.28.0.tar.gz easyRNASeq_2.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 81 119k 81 99687 0 0 516k 0 --:--:-- --:--:-- --:--:-- 517k 100 119k 100 119k 0 0 632k 0 --:--:-- --:--:-- --:--:-- 633k install for i386 * installing *source* package 'easyRNASeq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'basename' from package 'base' in package 'easyRNASeq' Creating a generic function for 'file.exists' from package 'base' in package 'easyRNASeq' ** help *** installing help indices converting help for package 'easyRNASeq' finding HTML links ... done BiocFileCache-methods html finding level-2 HTML links ... done GenomicRanges-methods html IRanges-methods html Rsamtools-methods html ShortRead-methods html basename-methods html easyRNASeq-AnnotParam-accessors html easyRNASeq-AnnotParam-class html easyRNASeq-AnnotParam html easyRNASeq-BamFileList html easyRNASeq-BamParam-accessors html easyRNASeq-BamParam-class html easyRNASeq-BamParam html easyRNASeq-RnaSeqParam-accessors html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/easyRNASeq.buildbin-libdir/00LOCK-easyRNASeq/00new/easyRNASeq/help/bamParam.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/easyRNASeq.buildbin-libdir/00LOCK-easyRNASeq/00new/easyRNASeq/help/annotParam.html easyRNASeq-RnaSeqParam-class html easyRNASeq-RnaSeqParam html easyRNASeq-accessors html easyRNASeq-annotation-internal-methods html easyRNASeq-annotation-methods html easyRNASeq-class html easyRNASeq-correction-methods html easyRNASeq-coverage-methods html easyRNASeq-datasets html easyRNASeq-defunct-annotation-methods html easyRNASeq-defunct html easyRNASeq-easyRNASeq html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/easyRNASeq.buildbin-libdir/00LOCK-easyRNASeq/00new/easyRNASeq/help/easyRNASeq-defunct.html easyRNASeq-global-variables html easyRNASeq-internal-AnnotParam-methods html easyRNASeq-internal-methods html easyRNASeq-island-methods html easyRNASeq-package html easyRNASeq-simpleRNASeq html easyRNASeq-summarization-internal-methods html easyRNASeq-summarization-methods html easyRNASeq-synthetic-transcripts html edgeR-methods html file.exists-methods html genomeIntervals-methods html parallel-methods html print-methods html show-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'easyRNASeq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'easyRNASeq' as easyRNASeq_2.28.0.zip * DONE (easyRNASeq) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'easyRNASeq' successfully unpacked and MD5 sums checked