############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/destiny_3.6.0.tar.gz && rm -rf destiny.buildbin-libdir && mkdir destiny.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=destiny.buildbin-libdir destiny_3.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL destiny_3.6.0.zip && rm destiny_3.6.0.tar.gz destiny_3.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 63 4530k 63 2858k 0 0 3156k 0 0:00:01 --:--:-- 0:00:01 3158k 100 4530k 100 4530k 0 0 3507k 0 0:00:01 0:00:01 --:--:-- 3509k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'destiny/docs/reference/updateObject-methods.html' to 'destiny/docs/reference/updateObject-method.html' * installing *source* package 'destiny' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/grDevices/include' -I"c:/extsoft/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase >, 0>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from 'class Eigen::MapBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76: required from 'class Eigen::Ref >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' RcppExports.cpp:22:127: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:22:128: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = int]': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:119:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:22:128: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/grDevices/include' -I"c:/extsoft/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c censoring.cpp -o censoring.o In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase >, 0>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from 'class Eigen::MapBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76: required from 'class Eigen::Ref >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from 'Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = int]' censoring.cpp:116:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = int]': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from 'Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = int]' censoring.cpp:116:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' censoring.cpp:105:17: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/grDevices/include' -I"c:/extsoft/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o utils.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/destiny.buildbin-libdir/00LOCK-destiny/00new/destiny/libs/i386 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'destiny' finding HTML links ... done DPT-matrix-methods html DPT-methods html DPT html DiffusionMap-accessors html DiffusionMap-class html DiffusionMap-methods html ExpressionSet-helpers html Gene-Relevance-methods html Gene-Relevance-plotting html Gene-Relevance html Sigmas-class html coercions html colorlegend html cube_helix html destiny-deprecated html destiny-generics html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/destiny.buildbin-libdir/00LOCK-destiny/00new/destiny/help/sigmas.html destiny html dm_predict html eig_decomp html extractions html find_dm_k html find_sigmas html find_tips html guo html knn html l_which html plot.DPT html plot.DiffusionMap html plot.Sigmas html projection_dist html random_root html updateObject-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'destiny/docs/reference/updateObject-methods.html' to 'destiny/docs/reference/updateObject-method.html' * installing *source* package 'destiny' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/grDevices/include' -I"C:/extsoft/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' RcppExports.cpp:22:127: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:22:128: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:119:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:22:128: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/grDevices/include' -I"C:/extsoft/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c censoring.cpp -o censoring.o In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:397, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:377, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:370, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Core:439, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from 'Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' censoring.cpp:116:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from 'Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' censoring.cpp:116:46: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' censoring.cpp:105:17: required from here C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppEigen/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/grDevices/include' -I"C:/extsoft/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/destiny.buildbin-libdir/destiny/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'destiny' as destiny_3.6.0.zip * DONE (destiny) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'destiny' successfully unpacked and MD5 sums checked