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### Running command:
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###   chmod a+r debCAM -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data debCAM
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* checking for file 'debCAM/DESCRIPTION' ... OK
* preparing 'debCAM':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'debcam.Rmd' using rmarkdown
Preprocessing

Registered S3 method overwritten by 'quantmod':
  method            from
  as.zoo.data.frame zoo 
outlier cluster number: 0

convex hull cluster number: 48

Marker Gene Selection

A and S Matrix Estimation


Attaching package: 'apcluster'

The following object is masked from 'package:stats':

    heatmap

Preprocessing

outlier cluster number: 0

convex hull cluster number: 43

Marker Gene Selection

A and S Matrix Estimation

Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Found 1 file(s)
GSE11058_series_matrix.txt.gz
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE11nnn/GSE11058/matrix/GSE11058_series_matrix.txt.gz'
Content type 'application/x-gzip' length 4590311 bytes (4.4 MB)
==================================================
downloaded 4.4 MB

Rows: 54675 Columns: 25
-- Column specification --------------------------------------------------------
Delimiter: "\t"
chr  (1): ID_REF
dbl (24): GSM279589, GSM279590, GSM279591, GSM279592, GSM279593, GSM279594, ...

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
File stored at: 
C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpwRon3S/GPL570.soft
Quitting from lines 279-304 (debcam.Rmd) 
Error: processing vignette 'debcam.Rmd' failed with diagnostics:
invalid 'row.names' length
--- failed re-building 'debcam.Rmd'

SUMMARY: processing the following file failed:
  'debcam.Rmd'

Error: Vignette re-building failed.
Execution halted