############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:daMA.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings daMA_1.64.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/daMA.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘daMA/DESCRIPTION’ ... OK * this is package ‘daMA’ version ‘1.64.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘daMA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: analyseMA.Rd:70: Dropping empty section \note prepare_Rd: analyseMA.Rd:72: Dropping empty section \seealso prepare_Rd: cmat.Rd:13-14: Dropping empty section \format prepare_Rd: cmat.Rd:15-16: Dropping empty section \details prepare_Rd: cmat.Rd:17-19: Dropping empty section \source prepare_Rd: cmatB.AB.Rd:13-14: Dropping empty section \format prepare_Rd: cmatB.AB.Rd:15-16: Dropping empty section \details prepare_Rd: cmatB.AB.Rd:17-18: Dropping empty section \source prepare_Rd: core.Rd:42: Dropping empty section \keyword prepare_Rd: core.Rd:29-30: Dropping empty section \details prepare_Rd: core.Rd:31-32: Dropping empty section \value prepare_Rd: core.Rd:38: Dropping empty section \note prepare_Rd: core.Rd:40: Dropping empty section \seealso prepare_Rd: core.Rd:41: Dropping empty section \examples prepare_Rd: data.3x2.Rd:15-16: Dropping empty section \details prepare_Rd: data.3x2.Rd:21-22: Dropping empty section \references prepare_Rd: designMA.Rd:66: Dropping empty section \note prepare_Rd: designMA.Rd:68: Dropping empty section \seealso prepare_Rd: id.3x2.Rd:14-15: Dropping empty section \details prepare_Rd: id.3x2.Rd:16-17: Dropping empty section \source prepare_Rd: id.3x2.Rd:18-19: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/daMA.Rcheck/00check.log’ for details.