############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cpvSNP_1.24.0.tar.gz && rm -rf cpvSNP.buildbin-libdir && mkdir cpvSNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cpvSNP.buildbin-libdir cpvSNP_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cpvSNP_1.24.0.zip && rm cpvSNP_1.24.0.tar.gz cpvSNP_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1759k 0 2485 0 0 30303 0 0:00:59 --:--:-- 0:00:59 30304 96 1759k 96 1703k 0 0 1577k 0 0:00:01 0:00:01 --:--:-- 1577k 100 1759k 100 1759k 0 0 1626k 0 0:00:01 0:00:01 --:--:-- 1626k install for i386 * installing *source* package 'cpvSNP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cpvSNP' finding HTML links ... done GLOSSIResult-class html GLOSSIResultCollection-class html GeneSetResult-class html GeneSetResultCollection-class html VEGASResult-class html VEGASResultCollection-class html assocPvalBySetPlot html createArrayData html degreesOfFreedom-method html exampleArrayData html geneSetAnalysis html geneSetName-methods html geneSets html geneToSNPList html glossi html glossiMarginal html pValue-method html plotPvals html show-methods html simulate_chisq html simulatedStats-method html statistic-methods html vegas html vegasMarginal html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cpvSNP' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cpvSNP' as cpvSNP_1.24.0.zip * DONE (cpvSNP) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'cpvSNP' successfully unpacked and MD5 sums checked