| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:01 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the cosmosR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cosmosR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 399/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cosmosR 1.0.1 (landing page) Katharina Zirngibl
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cosmosR |
| Version: 1.0.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cosmosR_1.0.1.tar.gz && rm -rf cosmosR.buildbin-libdir && mkdir cosmosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cosmosR.buildbin-libdir cosmosR_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cosmosR_1.0.1.zip && rm cosmosR_1.0.1.tar.gz cosmosR_1.0.1.zip |
| StartedAt: 2021-10-14 11:10:59 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:14:56 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 237.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cosmosR_1.0.1.tar.gz && rm -rf cosmosR.buildbin-libdir && mkdir cosmosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cosmosR.buildbin-libdir cosmosR_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cosmosR_1.0.1.zip && rm cosmosR_1.0.1.tar.gz cosmosR_1.0.1.zip
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install for i386
* installing *source* package 'cosmosR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cosmosR'
finding HTML links ... done
convert_ensembl_to_entrezid html
convert_genesymbols_to_entrezid html
cosmos_data html
default_CARNIVAL_options html
display_node_neighboorhood html
format_COSMOS_res html
load_tf_regulon_dorothea html
load_tf_regulon_dorothea_omnipath html
meta_network html
metabolite_to_pubchem html
omnipath_ptm html
prepare_metabolomics_data html
preprocess_COSMOS_metabolism_to_signaling
html
preprocess_COSMOS_signaling_to_metabolism
html
print.cosmos_data html
run_COSMOS_metabolism_to_signaling html
run_COSMOS_signaling_to_metabolism html
toy_RNA html
toy_metabolic_input html
toy_network html
toy_signaling_input html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cosmosR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cosmosR' as cosmosR_1.0.1.zip
* DONE (cosmosR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'cosmosR' successfully unpacked and MD5 sums checked