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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cosmosR_1.0.1.tar.gz && rm -rf cosmosR.buildbin-libdir && mkdir cosmosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cosmosR.buildbin-libdir cosmosR_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cosmosR_1.0.1.zip && rm cosmosR_1.0.1.tar.gz cosmosR_1.0.1.zip
###
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100 2042k  100 2042k    0     0  2492k      0 --:--:-- --:--:-- --:--:-- 2497k

install for i386

* installing *source* package 'cosmosR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cosmosR'
    finding HTML links ... done
    convert_ensembl_to_entrezid             html  
    convert_genesymbols_to_entrezid         html  
    cosmos_data                             html  
    default_CARNIVAL_options                html  
    display_node_neighboorhood              html  
    format_COSMOS_res                       html  
    load_tf_regulon_dorothea                html  
    load_tf_regulon_dorothea_omnipath       html  
    meta_network                            html  
    metabolite_to_pubchem                   html  
    omnipath_ptm                            html  
    prepare_metabolomics_data               html  
    preprocess_COSMOS_metabolism_to_signaling
                                            html  
    preprocess_COSMOS_signaling_to_metabolism
                                            html  
    print.cosmos_data                       html  
    run_COSMOS_metabolism_to_signaling      html  
    run_COSMOS_signaling_to_metabolism      html  
    toy_RNA                                 html  
    toy_metabolic_input                     html  
    toy_network                             html  
    toy_signaling_input                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cosmosR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cosmosR' as cosmosR_1.0.1.zip
* DONE (cosmosR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'cosmosR' successfully unpacked and MD5 sums checked