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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:conclus.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings conclus_1.0.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/conclus.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'conclus/DESCRIPTION' ... OK
* this is package 'conclus' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'conclus' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'conclus-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exportResults,scRNAseq-method
> ### Title: exportResults
> ### Aliases: exportResults,scRNAseq-method exportResults
> 
> ### ** Examples
> 
> ## Object scr containing the results of previous steps
> load(system.file("extdata/scrFull.Rdat", package="conclus"))
> 
> ## Saving all results
> exportResults(scr, saveAll=TRUE)
Saving all results.
Warning in file(file, ifelse(append, "a", "w")) :
  cannot open file '/tmp/RtmpTrdVjW/Results/1_MatrixInfo/LightExperience_expression_matrix.tsv': Permission denied
Error in file(file, ifelse(append, "a", "w")) : 
  cannot open the connection
Calls: exportResults ... .saveNormalizedMatrix -> .exportNormInfo -> write.table -> file
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'conclus-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: exportResults,scRNAseq-method
> ### Title: exportResults
> ### Aliases: exportResults,scRNAseq-method exportResults
> 
> ### ** Examples
> 
> ## Object scr containing the results of previous steps
> load(system.file("extdata/scrFull.Rdat", package="conclus"))
> 
> ## Saving all results
> exportResults(scr, saveAll=TRUE)
Saving all results.
Warning in file(file, ifelse(append, "a", "w")) :
  cannot open file '/tmp/RtmpTrdVjW/Results/1_MatrixInfo/LightExperience_expression_matrix.tsv': Permission denied
Error in file(file, ifelse(append, "a", "w")) : 
  cannot open the connection
Calls: exportResults ... .saveNormalizedMatrix -> .exportNormInfo -> write.table -> file
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R'
 OK
** running tests for arch 'x64' ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/conclus.Rcheck/00check.log'
for details.