############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cmapR_1.4.0.tar.gz && rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cmapR_1.4.0.zip && rm cmapR_1.4.0.tar.gz cmapR_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 49 3554k 49 1743k 0 0 1891k 0 0:00:01 --:--:-- 0:00:01 1891k 100 3554k 100 3554k 0 0 2300k 0 0:00:01 0:00:01 --:--:-- 2301k install for i386 * installing *source* package 'cmapR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cmapR' finding HTML links ... done GCT-class html GCT html align_matrices html annotate_gct html append_dim html cdesc_char html check_colnames html check_dups html distil html ds html extract_gct html fix_datatypes html gene_set html ids html is.wholenumber html kd_gct html lxb2mat html mat html melt_gct html finding level-2 HTML links ... done merge_gct html merge_with_precedence html meta html na_pad_matrix html parse_gctx html parse_gmt html parse_gmx html parse_grp html process_ids html rank_gct html read_gctx_ids html read_gctx_meta html robust_zscore html subset_gct html subset_to_ids html threshold html transpose_gct html update_gctx html write_gct html write_gctx html write_gctx_meta html write_gmt html write_grp html write_tbl html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cmapR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cmapR' as cmapR_1.4.0.zip * DONE (cmapR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'cmapR' successfully unpacked and MD5 sums checked