Rui Fu
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/clustifyr |
| git_branch: RELEASE_3_13 |
| git_last_commit: 7a53859 |
| git_last_commit_date: 2021-05-19 12:49:30 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:00 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the clustifyr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/clustifyr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 336/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| clustifyr 1.4.0 (landing page) Rui Fu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: clustifyr |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/clustifyr_1.4.0.tar.gz && rm -rf clustifyr.buildbin-libdir && mkdir clustifyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clustifyr.buildbin-libdir clustifyr_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL clustifyr_1.4.0.zip && rm clustifyr_1.4.0.tar.gz clustifyr_1.4.0.zip |
| StartedAt: 2021-10-14 09:58:41 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:02:30 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 229.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/clustifyr_1.4.0.tar.gz && rm -rf clustifyr.buildbin-libdir && mkdir clustifyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clustifyr.buildbin-libdir clustifyr_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL clustifyr_1.4.0.zip && rm clustifyr_1.4.0.tar.gz clustifyr_1.4.0.zip
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100 2811k 100 2811k 0 0 1785k 0 0:00:01 0:00:01 --:--:-- 1786k
install for i386
* installing *source* package 'clustifyr' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'clustifyr'
finding HTML links ... done
append_genes html
assess_rank_bias html
assign_ident html
average_clusters html
binarize_expr html
build_atlas html
calc_similarity html
calculate_pathway_gsea html
call_consensus html
call_to_metadata html
cbmc_m html
cbmc_ref html
check_raw_counts html
clustify html
clustify_lists html
clustify_nudge html
clustifyr-package html
clustifyr_methods html
collapse_to_cluster html
compare_lists html
cor_to_call html
cor_to_call_rank html
cor_to_call_topn html
cosine html
downrefs html
downsample_matrix html
feature_select_PCA html
file_marker_parse html
find_rank_bias html
gene_pct html
gene_pct_markerm html
get_best_match_matrix html
get_best_str html
get_common_elements html
get_similarity html
get_ucsc_reference html
get_unique_column html
get_vargenes html
gmt_to_list html
human_genes_10x html
insert_meta_object html
install_clustifyr_app html
kl_divergence html
make_comb_ref html
marker_select html
matrixize_markers html
mouse_genes_10x html
not_pretty_palette html
object_data html
object_loc_lookup html
object_ref html
overcluster html
overcluster_test html
parse_loc_object html
pbmc_markers html
pbmc_markers_M3Drop html
pbmc_matrix_small html
pbmc_meta html
pbmc_vargenes html
percent_clusters html
permute_similarity html
plot_best_call html
plot_call html
plot_cor html
plot_cor_heatmap html
plot_dims html
plot_gene html
plot_pathway_gsea html
plot_rank_bias html
pos_neg_marker html
pos_neg_select html
pretty_palette html
pretty_palette2 html
pretty_palette_ramp_d html
query_rank_bias html
ref_feature_select html
ref_marker_select html
reverse_marker_matrix html
run_clustifyr_app html
run_gsea html
s_small html
s_small3 html
sce_small html
seurat_meta html
seurat_ref html
vector_similarity html
write_meta html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'clustifyr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'clustifyr' as clustifyr_1.4.0.zip
* DONE (clustifyr)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'clustifyr' successfully unpacked and MD5 sums checked