############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cellmigRation_1.0.0.tar.gz && rm -rf cellmigRation.buildbin-libdir && mkdir cellmigRation.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellmigRation.buildbin-libdir cellmigRation_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cellmigRation_1.0.0.zip && rm cellmigRation_1.0.0.tar.gz cellmigRation_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 906k 13 118k 0 0 514k 0 0:00:01 --:--:-- 0:00:01 513k 100 906k 100 906k 0 0 1094k 0 --:--:-- --:--:-- --:--:-- 1094k install for i386 * installing *source* package 'cellmigRation' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cellmigRation' finding HTML links ... done AddDimension html CellMig-class html CellMigPCA html CellMigPCAclust html CellMigPCAclustALL html CellTracker html CellTrackerMainLoop html CentroidArray html CentroidValidation html ComputeTracksStats html DetectRadii html DiAutoCor html DiRatio html DiRatioPlot html EstimateDiameterRange html FMI html FianlizeOptiParams html FilterTrackedCells html FinRes html ForwardMigration html GenAllCombos html LinearConv2 html LoadTiff html MSD html MakeHypercube html MigrationStats html NextOdd html NonParallel4OptimizeParams html NonParallelTrackLoop html OptimizeParams html OptimizeParamsMainLoop html Parallel4OptimizeParams html ParallelTrackLoop html PerAndSpeed html PlotTracksSeparately html PostProcessTracking html Prep4OptimizeParams html ThreeConditions html TrackCellsDataset html TrajectoryDataset html ValidateTrackingArgs html VeAutoCor html VisualizeCntr html VisualizeImg html VisualizeStackCentroids html WSADataset html aggregateFR html aggregateTrackedCells html bpass html cellmigRation-package html circshift html cntrd html fixDA html fixExpName html fixFM1 html fixFM2 html fixFM3 html fixFM4 html fixFM5 html fixFM6 html fixID1 html fixID2 html fixID3 html fixID4 html fixID5 html fixID6 html fixMSD html fixPER1 html fixPER2 html fixPER3 html getAvailableAggrMetrics html getCellImages html getCellMigSlot html getCellTrackMeta html getCellTrackStats html getCellTracks html getCellsMeta html getCellsStats html getDACtable html getDiRatio html getFMItable html getForMigtable html getImageCentroids html getImageStacks html getMSDtable html getOptimizedParameters html getOptimizedParams html getPerAndSpeed html getPopulationStats html getProcessedImages html getProcessingStatus html getResults html getTracks html getVACtable html initializeTrackParams html innerBondRaster html internalPermutation html matfix html nontrivialBondTracking html pkfnd html plot3DAllTracks html plot3DTracks html plotAllTracks html plotSampleTracks html preProcCellMig html rmPreProcessing html runTrackingPermutation html setAnalyticParams html setCellMigSlot html setCellTracks html setCellsMeta html setExpName html setOptimizedParams html setProcessedImages html setProcessingStatus html setTrackedCellsMeta html setTrackedCentroids html setTrackedPositions html setTrackingStats html sinkAway html subNetworkTracking html track html trackHypercubeBuild html trackSlideProcessing html trackSlideWrapUp html trackedCells-class html trivialBondRaster html trivialBondTracking html visualizeCellTracks html visualizeTrcks html warnMessage html wsaPreProcessing html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cellmigRation' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cellmigRation' as cellmigRation_1.0.0.zip * DONE (cellmigRation) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'cellmigRation' successfully unpacked and MD5 sums checked