############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL cancerclass ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘cancerclass’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c copa.c -o copa.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c cor.c -o cor.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fc.c -o fc.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c help.c -o help.o help.c: In function ‘welch_df’: help.c:263:19: warning: variable ‘mean2’ set but not used [-Wunused-but-set-variable] 263 | double mean1, mean2, var1, var2 = 0.0; | ^~~~~ help.c:263:12: warning: variable ‘mean1’ set but not used [-Wunused-but-set-variable] 263 | double mean1, mean2, var1, var2 = 0.0; | ^~~~~ help.c: In function ‘bsortdesc’: help.c:344:13: warning: variable ‘anzahl’ set but not used [-Wunused-but-set-variable] 344 | int i,k,anzahl=0; | ^~~~~~ help.c: In function ‘bsort’: help.c:368:13: warning: variable ‘anzahl’ set but not used [-Wunused-but-set-variable] 368 | int i,k,anzahl=0; | ^~~~~~ gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c ort.c -o ort.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c os.c -o os.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c shift.c -o shift.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c statistics.c -o statistics.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c student.c -o student.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c throw.c -o throw.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c welch.c -o welch.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c wilcox.c -o wilcox.o wilcox.c: In function ‘wilcoxon’: wilcox.c:37:8: warning: variable ‘overall’ set but not used [-Wunused-but-set-variable] 37 | int overall = 0; | ^~~~~~~ wilcox.c: In function ‘pwilcoxon’: wilcox.c:75:8: warning: variable ‘overall’ set but not used [-Wunused-but-set-variable] 75 | int overall = 0; | ^~~~~~~ gcc -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o cancerclass.so copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-cancerclass/00new/cancerclass/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cancerclass)