############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cTRAP_1.10.1.tar.gz && rm -rf cTRAP.buildbin-libdir && mkdir cTRAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cTRAP.buildbin-libdir cTRAP_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cTRAP_1.10.1.zip && rm cTRAP_1.10.1.tar.gz cTRAP_1.10.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 40 3945k 40 1603k 0 0 1496k 0 0:00:02 0:00:01 0:00:01 1496k 100 3945k 100 3945k 0 0 1975k 0 0:00:01 0:00:01 --:--:-- 1975k install for i386 * installing *source* package 'cTRAP' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cTRAP' finding HTML links ... done ENCODEmetadata html GCT-class html HTMLfast html analyseDrugSetEnrichment html as.table.referenceComparison html cTRAP html calculateCellLineMean html calculateEvenlyDistributedBins html checkColnames html chunkColumns html closeOpenHandles html cmapMetadata html cmapPerturbationsCompounds html cmapPerturbationsKD html compareQuantile html compareWithAllMethods html convertENSEMBLtoGeneSymbols html counts html diffExprStat html dimnames.expressionDrugSensitivityAssociation html dot-plotBubbles html dot-prepareNavPage html downloadENCODEknockdownMetadata html downloadIfNotFound html filterCMapMetadata html findIntersectingCompounds html fix.datatypes html getCMapConditions html getCMapPerturbationTypes html getENCODEcontrols html launchCMapDataLoader html launchDiffExprLoader html launchDrugSetEnrichmentAnalyser html launchMetadataViewer html launchResultPlotter html listExpressionDrugSensitivityAssociation html loadCMapData html loadCMapZscores html loadCTRPgeneExpression html loadDrugDescriptors html loadENCODEsample html loadENCODEsamples html loadExpressionDrugSensitivityAssociation html loadNCI60drugSensitivity html matchStatsWithDrugSetsID html parseCMapID html performDifferentialExpression html performGSEA html plot.perturbationChanges html plot.referenceComparison html plotDrugSetEnrichment html plotESplot html plotGSEA html plotMetricDistribution html plotSingleCorr html plotTargetingDrugsVSsimilarPerturbations html predictTargetingDrugs html prepareCMapPerturbations html prepareDrugSets html prepareENCODEgeneExpression html prepareExpressionDrugSensitivityAssociation html prepareGSEAgenesets html prepareSetsCompoundInfo html prepareStatsCompoundInfo html prepareWordBreak html print.similarPerturbations html processByChunks html processIds html rankAgainstReference html rankColumns html rankSimilarPerturbations html readGctxIds html readGctxMeta html stripStr html subsetData html subsetDim html subsetToIds html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cTRAP' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cTRAP' as cTRAP_1.10.1.zip * DONE (cTRAP) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'cTRAP' successfully unpacked and MD5 sums checked