############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL bgx ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘bgx’ ... ** using staged installation checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for C compiler vendor... gnu checking whether C compiler accepts -ffast-math... yes checking whether C compiler accepts -O3... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc architecture flag... checking for x86 cpuid 0 output... 16:756e6547:6c65746e:49656e69 checking for x86 cpuid 1 output... 50657:45400800:7ffefbff:bfebfbff checking whether C compiler accepts -march=pentium2... no checking whether C compiler accepts -mcpu=pentium2... no checking whether C compiler accepts -mpentium2... no checking whether C compiler accepts -march=pentiumpro... no checking whether C compiler accepts -mcpu=pentiumpro... no checking whether C compiler accepts -mpentiumpro... no checking for gcc architecture flag... unknown checking for gcc option to accept ISO C99... none needed checking for main in -lm... yes Untarring Boost header files... checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o In file included from ../boostIncl/boost/config.hpp:57, from ../boostIncl/boost/random/linear_congruential.hpp:22, from ../boostIncl/boost/random.hpp:36, from rand.hh:32, from bgx.cc:32: ../boostIncl/boost/random/detail/const_mod.hpp: In static member function ‘static IntType boost::random::const_mod::invert_euclidian(IntType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_148’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 148 | BOOST_STATIC_ASSERT(m > 0); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_152’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 152 | BOOST_STATIC_ASSERT(boost::integer_traits::is_signed); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_congruential.hpp: In constructor ‘boost::random::linear_congruential::linear_congruential(IntType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_63’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 63 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp: In constructor ‘boost::random::inversive_congruential::inversive_congruential(IntType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_50’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 50 | BOOST_STATIC_ASSERT(b >= 0); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_51’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 51 | BOOST_STATIC_ASSERT(p > 1); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_52’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 52 | BOOST_STATIC_ASSERT(a >= 1); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/shuffle_output.hpp: In member function ‘void boost::random::shuffle_output::init()’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_124’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 124 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/mersenne_twister.hpp: In member function ‘void boost::random::mersenne_twister::seed(Generator&)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_99’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 99 | BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp: In constructor ‘boost::random::subtract_with_carry::subtract_with_carry()’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_83’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 83 | BOOST_STATIC_ASSERT(std::numeric_limits::is_signed); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_84’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 84 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift::linear_feedback_shift(UIntType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_55’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 55 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_56’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 56 | BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift::linear_feedback_shift(It&, It)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 69 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_70’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 70 | BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp: In member function ‘boost::random::xor_combine::result_type boost::random::xor_combine::operator()()’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_67’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 67 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_68’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 68 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 69 | BOOST_STATIC_ASSERT(std::numeric_limits::digits >= std::numeric_limits::digits); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::detail::uniform_smallint_float::uniform_smallint_float(boost::detail::uniform_smallint_float::base_type&, IntType, IntType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_121’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 121 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_122’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 122 | BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::uniform_smallint::uniform_smallint(IntType, IntType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_170’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 170 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_int.hpp: In constructor ‘boost::uniform_int::uniform_int(IntType, IntType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_47’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 47 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/random_number_generator.hpp: In constructor ‘boost::random_number_generator::random_number_generator(boost::random_number_generator::base_type&)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 38 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_real.hpp: In constructor ‘boost::uniform_real::uniform_real(RealType, RealType)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_41’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 41 | BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp: In constructor ‘boost::poisson_distribution::poisson_distribution(const RealType&)’: ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 38 | BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_39’ locally defined but not used [-Wunused-local-typedefs] 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’ 523 | #define BOOST_DO_JOIN2( X, Y ) X##Y | ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’ 521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) | ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’ 105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__) | ^~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’ 39 | BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); | ^~~~~~~~~~~~~~~~~~~ In file included from bgx.cc:32: rand.hh: In member function ‘RealType Rand::Normal()’: rand.hh:399:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 399 | if(u0<.5) return y; return -y; | ^~ rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 399 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:406:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 406 | if(u0<.5) return y; return -y; | ^~ rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 406 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:413:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 413 | if(u0<.5) return y; return -y; | ^~ rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 413 | if(u0<.5) return y; return -y; | ^~~~~~ rand.hh:420:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 420 | if(u0<.5) return y; return -y; | ^~ rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 420 | if(u0<.5) return y; return -y; | ^~~~~~ g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx_frontend.cc -o bgx_frontend.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -ffast-math -O3 -c qnorm.c -o qnorm.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c rundir.cc -o rundir.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I ../boostIncl -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c sokal.cc -o sokal.o g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o bgx.so bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -lm -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR rm -r ../boostIncl installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-bgx/00new/bgx/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bgx)