############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/beadarraySNP_1.58.0.tar.gz && rm -rf beadarraySNP.buildbin-libdir && mkdir beadarraySNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beadarraySNP.buildbin-libdir beadarraySNP_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL beadarraySNP_1.58.0.zip && rm beadarraySNP_1.58.0.tar.gz beadarraySNP_1.58.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 95 437k 95 417k 0 0 1386k 0 --:--:-- --:--:-- --:--:-- 1383k 100 437k 100 437k 0 0 1446k 0 --:--:-- --:--:-- --:--:-- 1448k install for i386 * installing *source* package 'beadarraySNP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'beadarraySNP' finding HTML links ... done BeadstudioQC html CopynumberConversion html Datasets html GenomicReports html GetBeadStudioSampleNames html PolarTransforms html QCIllumina-class html Sample_Map2Samplesheet html SnpSetSegments-class html finding level-2 HTML links ... done alterCN html arrayType html backgroundCorrect.SNP html backgroundEstimate html calculateLOH html calculateQCarray html class.SnpSetIllumina html compareGenotypes html createCNSummary html dist.GT html getDNAindex html heterozygosity html heterozygousSNPs html interactiveCNselect html normalizeBetweenAlleles.SNP html normalizeBetweenSubsamples.SNP html normalizeLoci.SNP html normalizeWithinArrays.SNP html pdfChromosomesSmoothCopyNumber html pdfQC html plotGoldenGate4OPA html plotQC html read.SnpSetIllumina html removeLowQualityProbes html removeLowQualitySamples html renameOPA html reportGenotypeSegmentation html reportSamplePanelQC-methods html segmentate html setRealCN html smoothed.intensity html standardNormalization html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'beadarraySNP' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'beadarraySNP' as beadarraySNP_1.58.0.zip * DONE (beadarraySNP) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'beadarraySNP' successfully unpacked and MD5 sums checked