############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ballgown_2.24.0.tar.gz && rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ballgown.buildbin-libdir ballgown_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ballgown_2.24.0.zip && rm ballgown_2.24.0.tar.gz ballgown_2.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 78 3218k 78 2524k 0 0 3268k 0 --:--:-- --:--:-- --:--:-- 3270k 100 3218k 100 3218k 0 0 3501k 0 --:--:-- --:--:-- --:--:-- 3501k install for i386 * installing *source* package 'ballgown' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'structure' in package 'ballgown' ** help *** installing help indices converting help for package 'ballgown' finding HTML links ... done annotate_assembly html ballgown-class html ballgown-constructor html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/ballgown.buildbin-libdir/00LOCK-ballgown/00new/ballgown/help/ballgown.html ballgown-package html ballgownrsem html bg html checkAssembledTx html clusterTranscripts html collapseTranscripts html contains html dirs html eexpr html expr-replace html expr html exprfilter html geneIDs html geneNames html getAttributeField html getGenes html gexpr html gffRead html gffReadGR html iexpr html indexes-replace html indexes html last html mergedDate html pData-replace html pData html pctOverlap html plotLatentTranscripts html plotMeans html plotTranscripts html sampleNames html seqnames html stattest html structure html subset html tGene html texpr html transcriptIDs html transcriptNames html writeFiles html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ballgown' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ballgown' as ballgown_2.24.0.zip * DONE (ballgown) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'ballgown' successfully unpacked and MD5 sums checked