############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/autonomics_1.0.1.tar.gz && rm -rf autonomics.buildbin-libdir && mkdir autonomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=autonomics.buildbin-libdir autonomics_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL autonomics_1.0.1.zip && rm autonomics_1.0.1.tar.gz autonomics_1.0.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 9411k 2 222k 0 0 723k 0 0:00:13 --:--:-- 0:00:13 723k 46 9411k 46 4409k 0 0 3416k 0 0:00:02 0:00:01 0:00:01 3415k 100 9411k 100 9411k 0 0 4202k 0 0:00:02 0:00:02 --:--:-- 4205k install for i386 * installing *source* package 'autonomics' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to '/' ** help *** installing help indices converting help for package 'autonomics' finding HTML links ... done AUTONOMICS_DATASETS html MAXQUANT_PATTERNS_PEPCOUNTS html MAXQUANT_PATTERNS_QUANTITY html TESTS html add_smiles html analysis html analyze html assert_is_valid_sumexp html biplot html biplot_corrections html biplot_covariates html center html contrast_subgroup_cols html contrastdefs html counts html counts2cpm html counts2tpm html cpm html create_design html create_sfile html default_formula html default_sfile html download_data html download_gtf html dt2mat html explore_imputations html explore_transformations html extract_features html extract_rectangle html fdata html filter_exprs_replicated_in_some_subgroup html filter_features html filter_medoid html filter_replicated html filter_samples html fit_limma html flevels html fnames html formula2str html fvalues html fvars html guess_maxquant_quantity html guess_sep html halfnormimpute html impute_systematic_nondetects html invert html is_imputed html is_sig html limma html log2counts html log2countsratios html log2cpm html log2cpmratios html log2tpm html log2tpmratios html log2transform html make_volcano_dt html matrix2sumexp html merge_sdata html merge_sfile html message_df html occupancies html pca html plot_boxplots html plot_contrastogram html plot_data html plot_densities html plot_detections html plot_features html plot_venn html plot_violins html plot_volcano html preprocess_rnaseq_counts html proteingroups html read_affymetrix html read_metabolon html read_proteingroups html read_rectangles html read_rnaseq_counts html read_somascan html rm_singleton_samples html scaledlibsizes html sdata html slevels html snames html split_by_svar html split_extract html standardize_maxquant_snames html subgroup_matrix html subtract_baseline html sumexp2mae html sumexp_to_long_dt html summarize_fit html svalues html svars html tpm html values html venn_detects html weights html zero_to_na html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'autonomics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'autonomics' as autonomics_1.0.1.zip * DONE (autonomics) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'autonomics' successfully unpacked and MD5 sums checked