############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/aroma.light_3.22.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.22.0.zip && rm aroma.light_3.22.0.tar.gz aroma.light_3.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 408k 100 408k 0 0 1269k 0 --:--:-- --:--:-- --:--:-- 1272k install for i386 * installing *source* package 'aroma.light' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'aroma.light' finding HTML links ... done 1._Calibration_and_Normalization html Non-documented_objects html aroma.light-package html averageQuantile html backtransformAffine html backtransformPrincipalCurve html calibrateMultiscan html callNaiveGenotypes html distanceBetweenLines html findPeaksAndValleys html fitIWPCA html fitNaiveGenotypes html fitPrincipalCurve html fitXYCurve html iwpca html likelihood.smooth.spline html medianPolish html normalizeAffine html normalizeAverage html normalizeCurveFit html normalizeDifferencesToAverage html normalizeFragmentLength html normalizeQuantileRank html normalizeQuantileRank.matrix html normalizeQuantileSpline html normalizeTumorBoost html pairedAlleleSpecificCopyNumbers html plotDensity html plotMvsA html plotMvsAPairs html plotMvsMPairs html plotXYCurve html print.SmoothSplineLikelihood html robustSmoothSpline html sampleCorrelations html sampleTuples html wpca html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'aroma.light' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'aroma.light' as aroma.light_3.22.0.zip * DONE (aroma.light) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'aroma.light' successfully unpacked and MD5 sums checked