############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf annotatr.buildbin-libdir && mkdir annotatr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=annotatr.buildbin-libdir annotatr_1.18.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'annotatr' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' ** help *** installing help indices converting help for package 'annotatr' finding HTML links ... done annotate_regions html annotations html annotatr html annotatr_cache html build_ah_annots html build_annotations html build_cpg_annots html build_enhancer_annots html build_gene_annots html build_hmm_annots html build_lncrna_annots html builtin_annotations html builtin_genomes html check_annotations html expand_annotations html get_cellline_from_code html get_cellline_from_shortcut html get_orgdb_name html get_txdb_name html plot_annotation html plot_categorical html plot_coannotations html plot_numerical html plot_numerical_coannotations html randomize_regions html read_annotations html read_regions html reformat_hmm_codes html subset_order_tbl html summarize_annotations html summarize_categorical html summarize_numerical html tidy_annotations html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' ** testing if installed package can be loaded from final location Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'annotatr' ... ** testing if installed package can be loaded Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' * MD5 sums packaged installation of 'annotatr' as annotatr_1.18.1.zip * DONE (annotatr)