############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r TFutils -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TFutils ### ############################################################################## ############################################################################## * checking for file 'TFutils/DESCRIPTION' ... OK * preparing 'TFutils': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'TFutils.Rmd' using rmarkdown [E::hts_open_format] Failed to open file http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz Quitting from lines 282-287 (TFutils.Rmd) Error: processing vignette 'TFutils.Rmd' failed with diagnostics: BiocParallel errors element index: 1, 2, 3, 4, 5, 6, ... first error: scanTabix: failed to open file: http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz path: http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz index: http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz.tbi --- failed re-building 'TFutils.Rmd' --- re-building 'fimo16.Rmd' using rmarkdown [E::hts_open_format] Failed to open file http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz Quitting from lines 39-45 (fimo16.Rmd) Error: processing vignette 'fimo16.Rmd' failed with diagnostics: BiocParallel errors element index: 1 first error: scanTabix: failed to open file: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz path: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz index: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz.tbi --- failed re-building 'fimo16.Rmd' SUMMARY: processing the following files failed: 'TFutils.Rmd' 'fimo16.Rmd' Error: Vignette re-building failed. Execution halted