############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Sushi_1.30.0.tar.gz && rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sushi.buildbin-libdir Sushi_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Sushi_1.30.0.zip && rm Sushi_1.30.0.tar.gz Sushi_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 4020k 0 15985 0 0 134k 0 0:00:29 --:--:-- 0:00:29 134k 46 4020k 46 1881k 0 0 1662k 0 0:00:02 0:00:01 0:00:01 1663k 100 4020k 100 4020k 0 0 2064k 0 0:00:01 0:00:01 --:--:-- 2065k install for i386 * installing *source* package 'Sushi' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Sushi' finding HTML links ... done SushiColors html Sushi_5C.bedpe html Sushi_ChIAPET_pol2.bedpe html Sushi_ChIPExo_CTCF.bedgraph html Sushi_ChIPSeq_CTCF.bedgraph html Sushi_ChIPSeq_pol2.bed html Sushi_ChIPSeq_pol2.bedgraph html Sushi_ChIPSeq_severalfactors.bed html Sushi_DNaseI.bedgraph html Sushi_GWAS.bed html Sushi_HiC.matrix html Sushi_RNASeq_K562.bedgraph html Sushi_genes.bed html Sushi_hg18_genome html Sushi_transcripts.bed html addlegend html chromOffsets html convertstrandinfo html labelgenome html labelplot html maptocolors html maptolwd html opaque html plotBed html plotBedgraph html plotBedpe html plotGenes html finding level-2 HTML links ... done plotHic html plotManhattan html sortChrom html zoombox html zoomsregion html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Sushi' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'Sushi' as Sushi_1.30.0.zip * DONE (Sushi) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'Sushi' successfully unpacked and MD5 sums checked