############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SomaticSignatures_2.28.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.28.0.zip && rm SomaticSignatures_2.28.0.tar.gz SomaticSignatures_2.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 126k 100 126k 0 0 659k 0 --:--:-- --:--:-- --:--:-- 662k install for i386 * installing *source* package 'SomaticSignatures' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SomaticSignatures' finding HTML links ... done MutationalSignatures-class html SomaticSignatures-package html cluster-spetrum html decomposition-functions html gc html granges-utils html finding level-2 HTML links ... done hs-chrs html kmers-data html kmers html motif-functions html mutation-context html mutation-distribution html mutational-normalization html mutational-plots html mutational-signatures html mutect html number-signatures html sca-data html signature-plot-functions html signatures21-data html utils html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SomaticSignatures' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SomaticSignatures' as SomaticSignatures_2.28.0.zip * DONE (SomaticSignatures) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'SomaticSignatures' successfully unpacked and MD5 sums checked