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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch SingleMoleculeFootprinting
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* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
* installing *source* package 'SingleMoleculeFootprinting' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SingleMoleculeFootprinting'
    finding HTML links ... done
    BaitCapture                             html  
    BinMethylation                          html  
    CallContextMethylation                  html  
    CollapseStrands                         html  
    CollapseStrandsSM                       html  
    ConversionRate                          html  
    CoverageFilter                          html  
    DetectExperimentType                    html  
    FilterByConversionRate                  html  
    FilterContextCytosines                  html  
    FixOverhang                             html  
    GetQuasRprj                             html  
    GetSingleMolMethMat                     html  
    HierarchicalClustering                  html  
    OneTFstates                             html  
    PlotAvgSMF                              html  
    PlotSM                                  html  
    PlotSingleMoleculeStack                 html  
    PlotSingleSiteSMF                       html  
    SampleCorrelation                       html  
    SingleTFStateQuantificationPlot         html  
    SortReads                               html  
    SortReadsBySingleTF                     html  
    SortReadsByTFCluster                    html  
    StateQuantificationPlot                 html  
    TFPairStateQuantificationPlot           html  
    TFpairStates                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SingleMoleculeFootprinting)
Making 'packages.html' ... done