############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SeqSQC_1.14.0.tar.gz && rm -rf SeqSQC.buildbin-libdir && mkdir SeqSQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqSQC.buildbin-libdir SeqSQC_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SeqSQC_1.14.0.zip && rm SeqSQC_1.14.0.tar.gz SeqSQC_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 27 3072k 27 834k 0 0 883k 0 0:00:03 --:--:-- 0:00:03 883k 85 3072k 85 2628k 0 0 1344k 0 0:00:02 0:00:01 0:00:01 1344k 100 3072k 100 3072k 0 0 1404k 0 0:00:02 0:00:02 --:--:-- 1405k install for i386 * installing *source* package 'SeqSQC' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SeqSQC' finding HTML links ... done CCDS.Hs37.3.reduced_chr1.bed html IBDCheck html IBDRemove html Inbreeding html LoadVfile html MissingRate html PCACheck html RenderReport html SeqOpen html SeqSQC-class html SeqSQC-package html SexCheck html example.gds html example.seqfile.Rdata html example_sub.vcf html plotQC html problemList html sampleAnnotation.txt html sampleQC html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SeqSQC' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SeqSQC' as SeqSQC_1.14.0.zip * DONE (SeqSQC) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'SeqSQC' successfully unpacked and MD5 sums checked