############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SNPhood_1.22.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.22.0.zip && rm SNPhood_1.22.0.tar.gz SNPhood_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 28 3965k 28 1119k 0 0 2297k 0 0:00:01 --:--:-- 0:00:01 2297k 100 3965k 100 3965k 0 0 3544k 0 0:00:01 0:00:01 --:--:-- 3546k install for i386 * installing *source* package 'SNPhood' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SNPhood' finding HTML links ... done SNPhood-class html SNPhood html SNPhood.o html analyzeSNPhood html finding level-2 HTML links ... done annotation-methods html annotationBins html annotationBins2 html annotationDatasets html annotationReadGroups html annotationRegions html associateGenotypes html bins-methods html changeObjectIntegrityChecking html collectFiles html convertToAllelicFractions html counts-method html datasets-methods html deleteDatasets html deleteReadGroups html deleteRegions html enrichment-methods html getDefaultParameterList html mergeReadGroups html parameters-methods html plotAllelicBiasResults html plotAllelicBiasResultsOverview html plotAndCalculateCorrelationDatasets html plotAndCalculateWeakAndStrongGenotype html plotAndClusterMatrix html plotAndSummarizeAllelicBiasTest html plotBinCounts html plotClusterAverage html plotFDRResults html plotGenotypesPerCluster html plotGenotypesPerSNP html plotRegionCounts html readGroups-methods html regions-methods html renameBins html renameDatasets html renameReadGroups html renameRegions html results html testForAllelicBiases html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SNPhood' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SNPhood' as SNPhood_1.22.0.zip * DONE (SNPhood) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'SNPhood' successfully unpacked and MD5 sums checked