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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SMITE_1.20.0.tar.gz && rm -rf SMITE.buildbin-libdir && mkdir SMITE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMITE.buildbin-libdir SMITE_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SMITE_1.20.0.zip && rm SMITE_1.20.0.tar.gz SMITE_1.20.0.zip
###
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100 2952k  100 2952k    0     0  2093k      0  0:00:01  0:00:01 --:--:-- 2095k

install for i386

* installing *source* package 'SMITE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SMITE'
    finding HTML links ... done
    Reactome.Symbol.Igraph                  html  
    SMITE-package                           html  
    addShadowText                           html  
    annotateExpression                      html  
    annotateModification                    html  
    convertGeneIds                          html  
    curated_expression                      html  
    extractExpression                       html  
    extractGOseq                            html  
    extractModification                     html  
    extractModules                          html  
    extractScores                           html  
    genes_for_conversiontest                html  
    hg19_gene_bed                           html  
    highScores                              html  
    histone_h3k4me1                         html  
    makePvalueAnnotation                    html  
    makePvalueObject                        html  
    methylationdata                         html  
    normalizePval                           html  
    plotCompareScores                       html  
    plotDensityPval                         html  
    plotModule                              html  
    removeModification                      html  
    runBioNet                               html  
    runGOseq                                html  
    runSpinglass                            html  
    scorePval                               html  
    stoufferTest                            html  
    test_annotation_score_data              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SMITE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SMITE' as SMITE_1.20.0.zip
* DONE (SMITE)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SMITE' successfully unpacked and MD5 sums checked