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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SGSeq_1.26.0.tar.gz && rm -rf SGSeq.buildbin-libdir && mkdir SGSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SGSeq.buildbin-libdir SGSeq_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SGSeq_1.26.0.zip && rm SGSeq_1.26.0.tar.gz SGSeq_1.26.0.zip
###
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100 1259k  100 1259k    0     0  1467k      0 --:--:-- --:--:-- --:--:-- 1467k

install for i386

* installing *source* package 'SGSeq' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SGSeq'
    finding HTML links ... done
    SGFeatureCounts                         html  
    SGFeatures                              html  
    SGSegments                              html  
    SGVariantCounts                         html  
    SGVariants                              html  
    TxFeatures                              html  
    analyzeFeatures                         html  
    analyzeVariants                         html  
    annotate                                html  
    annotateSGVariants                      html  
    assays                                  html  
    convertToSGFeatures                     html  
    convertToTxFeatures                     html  
    exonCompatible                          html  
    exportFeatures                          html  
    filterFeatures                          html  
    findOverlapsRanges                      html  
    findSGVariants                          html  
    getBamInfo                              html  
    getSGFeatureCounts                      html  
    getSGFeatureCountsPerSample             html  
    getSGVariantCounts                      html  
    gr                                      html  
    importTranscripts                       html  
    junctionCompatible                      html  
    makeSGFeatureCounts                     html  
    makeVariantNames                        html  
    mergeTxFeatures                         html  
    plotCoverage                            html  
    plotFeatures                            html  
    plotSpliceGraph                         html  
    plotVariants                            html  
    predictCandidatesInternal               html  
    predictCandidatesTerminal               html  
    predictExonsInternal                    html  
    predictExonsTerminal                    html  
    predictJunctions                        html  
    predictSpliced                          html  
    predictTxFeatures                       html  
    predictTxFeaturesPerSample              html  
    predictTxFeaturesPerStrand              html  
    predictVariantEffects                   html  
    processTerminalExons                    html  
    removeExonsIsolated                     html  
    sgf_ann                                 html  
    sgf_pred                                html  
    sgfc_ann                                html  
    sgfc_pred                               html  
    sgv_ann                                 html  
    sgv_pred                                html  
    sgvc_ann                                html  
    sgvc_ann_from_bam                       html  
    sgvc_pred                               html  
    sgvc_pred_from_bam                      html  
    si                                      html  
    slots                                   html  
    splicesiteOverlap                       html  
    tx                                      html  
    txf_ann                                 html  
    txf_pred                                html  
    updateObject                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SGSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SGSeq' as SGSeq_1.26.0.zip
* DONE (SGSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SGSeq' successfully unpacked and MD5 sums checked