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This page was generated on 2021-10-15 15:06:49 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for Repitools on machv2

To the developers/maintainers of the Repitools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1554/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Repitools 1.38.0  (landing page)
Mark Robinson
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/Repitools
git_branch: RELEASE_3_13
git_last_commit: dc767d1
git_last_commit_date: 2021-05-19 11:49:04 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Repitools
Version: 1.38.0
Command: rm -rf Repitools.buildbin-libdir && mkdir Repitools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Repitools_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Repitools.buildbin-libdir
StartedAt: 2021-10-15 03:42:37 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 03:43:41 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 63.3 seconds
RetCode: 0
Status:   OK  
PackageFile: Repitools_1.38.0.tgz
PackageFileSize: 2.54 MiB

Command output

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###
### Running command:
###
###   rm -rf Repitools.buildbin-libdir && mkdir Repitools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Repitools_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Repitools.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Repitools.buildbin-libdir Repitools_1.38.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Repitools’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -D R_NO_REMAP -I. -fPIC  -Wall -g -O2  -c const.c -o const.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -D R_NO_REMAP -I. -fPIC  -Wall -g -O2  -c hyp2f1.c -o hyp2f1.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -D R_NO_REMAP -I. -fPIC  -Wall -g -O2  -c mtherr.c -o mtherr.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Repitools.so const.o hyp2f1.o mtherr.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/Repitools.buildbin-libdir/00LOCK-Repitools/00new/Repitools/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Repitools)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Repitools.buildbin-libdir/Repitools/libs/Repitools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "Repitools.buildbin-libdir/Repitools/libs/Repitools.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "Repitools.buildbin-libdir/Repitools/libs/Repitools.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "Repitools.buildbin-libdir/Repitools/libs/Repitools.so"