############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNASeqR ### ############################################################################## ############################################################################## * checking for file ‘RNASeqR/DESCRIPTION’ ... OK * preparing ‘RNASeqR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RNASeqR.Rmd’ using rmarkdown Loading required package: ggplot2 Loading required package: pathview ############################################################################## Pathview is an open source software package distributed under GNU General Public License version 3 (GPLv3). Details of GPLv3 is available at http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to formally cite the original Pathview paper (not just mention it) in publications or products. For details, do citation("pathview") within R. The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG license agreement (details at http://www.kegg.jp/kegg/legal.html). ############################################################################## Loading required package: edgeR Loading required package: limma Welcome to RNASeqR ************** Checking input parameters ************ (✔) : Input parameters are all not NA !! ************** Checking operating system type ************ (✔) : Your system operating system is 'linux' ************** Checking python version ************ Quitting from lines 244-252 (RNASeqR.Rmd) Error: processing vignette 'RNASeqR.Rmd' failed with diagnostics: invalid argument type --- failed re-building ‘RNASeqR.Rmd’ SUMMARY: processing the following file failed: ‘RNASeqR.Rmd’ Error: Vignette re-building failed. Execution halted