############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RMassBank ### ############################################################################## ############################################################################## * checking for file ‘RMassBank/DESCRIPTION’ ... OK * preparing ‘RMassBank’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RMassBank.Rmd’ using rmarkdown | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% Quitting from lines 431-432 (RMassBank.Rmd) Error: processing vignette 'RMassBank.Rmd' failed with diagnostics: unexpected character '<' --- failed re-building ‘RMassBank.Rmd’ --- re-building ‘RMassBankNonstandard.Rmd’ using rmarkdown | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% | | | 0% | |================================ | 50% | |================================================================| 100% --- finished re-building ‘RMassBankNonstandard.Rmd’ --- re-building ‘RMassBankXCMS.Rmd’ using rmarkdown | | | 0% | |================================ | 50% | | | 0% | |================================================================| 100% | | | 0% | |================================================================| 100% | | | 0% | |================================================================| 100% | | | 0% | |================================ | 50% | | | 0% | |================================ | 50% | | | 0% | |================================================================| 100% --- finished re-building ‘RMassBankXCMS.Rmd’ SUMMARY: processing the following file failed: ‘RMassBank.Rmd’ Error: Vignette re-building failed. Execution halted