############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RBGL ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘RBGL’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c bbc.cpp -o bbc.o In file included from bbc.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c cliques.cpp -o cliques.o In file included from cliques.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o In file included from clusteringCoef.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c dominatorTree.cpp -o dominatorTree.o In file included from dominatorTree.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o In file included from edmonds_optimum_branching.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ In file included from edmonds_optimum_branching.cpp:3: In file included from ./edmonds_optimum_branching.hpp:94: ./edmonds_optimum_branching_impl.hpp:520:71: warning: unused typedef 'EdgeIter' [-Wunused-local-typedef] typedef typename graph_traits::edge_iterator EdgeIter; ^ ./edmonds_optimum_branching_impl.hpp:521:71: warning: unused typedef 'weight_t' [-Wunused-local-typedef] typedef typename property_traits::value_type weight_t; ^ 3 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c hcs.cpp -o hcs.o In file included from hcs.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c incrConnComp.cpp -o incrConnComp.o In file included from incrConnComp.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ incrConnComp.cpp:74:32: warning: unused variable 'child_index' [-Wunused-variable] BOOST_FOREACH(VertexIndex child_index, components[current_index]) { ^ 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c interfaces.cpp -o interfaces.o In file included from interfaces.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ interfaces.cpp:57:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:61:62: warning: unused typedef 'Color' [-Wunused-local-typedef] typedef property_map::type Color; ^ interfaces.cpp:99:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:98:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:143:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:142:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:199:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:198:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:225:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:226:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:252:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:253:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:295:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:320:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:360:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:361:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ 17 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c minST.cpp -o minST.o In file included from minST.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ minST.cpp:14:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ minST.cpp:48:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ minST.cpp:81:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ 4 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c mincut.cpp -o mincut.o In file included from mincut.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c ordering.cpp -o ordering.o In file included from ordering.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ In file included from ordering.cpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/cuthill_mckee_ordering.hpp:15: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/sparse_ordering.hpp:24: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages] BOOST_PRAGMA_MESSAGE( ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :112:2: note: expanded from here message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " " + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.") ^ ordering.cpp:182:48: warning: unused variable 'id' [-Wunused-variable] property_map::type id = get(vertex_index, g); ^ ordering.cpp:133:53: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits::vertex_descriptor Vertex; ^ ordering.cpp:176:53: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits::vertex_descriptor Vertex; ^ ordering.cpp:232:47: warning: unused typedef 'Pair' [-Wunused-local-typedef] typedef std::pair Pair; ^ 6 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c planar.cpp -o planar.o In file included from planar.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ planar.cpp:225:30: warning: unused variable 'oi' [-Wunused-variable] Vertex_Vec_t::iterator oi, oi_end = ordering.end(); ^ planar.cpp:225:34: warning: unused variable 'oi_end' [-Wunused-variable] Vertex_Vec_t::iterator oi, oi_end = ordering.end(); ^ planar.cpp:429:32: warning: unused variable 'ki' [-Wunused-variable] Edge_Vec_t::iterator ki, ki_end = kuratowski_edges.end(); ^ planar.cpp:429:36: warning: unused variable 'ki_end' [-Wunused-variable] Edge_Vec_t::iterator ki, ki_end = kuratowski_edges.end(); ^ planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable] int i, j = 0; ^ 6 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c registerSigHandlers.cpp -o registerSigHandlers.o In file included from registerSigHandlers.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c shortestPath.cpp -o shortestPath.o In file included from shortestPath.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ shortestPath.cpp:17:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ shortestPath.cpp:136:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ shortestPath.cpp:180:39: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef std::pair < int, int >Edge; ^ shortestPath.cpp:177:81: warning: unused typedef 'Graph' [-Wunused-local-typedef] property< edge_weight_t, double, property< edge_weight2_t, double > > > Graph; ^ 5 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c sna.cpp -o sna.o In file included from sna.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ sna.cpp:161:9: warning: unused variable 'res_cap' [-Wunused-variable] res_cap = get(edge_residual_capacity, flow_g); ^ 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c transitive_closure.cpp -o transitive_closure.o In file included from transitive_closure.cpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/transitive_closure.hpp:16: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages] BOOST_PRAGMA_MESSAGE( ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :419:2: note: expanded from here message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " " + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.") ^ In file included from transitive_closure.cpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/transitive_closure.hpp:17: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/strong_components.hpp:267: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/transpose_graph.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/reverse_graph.hpp:9: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :175:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c wavefront.cpp -o wavefront.o In file included from wavefront.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ :129:2: note: expanded from here message("This header is deprecated. Use " "" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RBGL/00new/RBGL/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘RBGL.Rnw’ ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RBGL)