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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PhyloProfile_1.6.6.tar.gz && rm -rf PhyloProfile.buildbin-libdir && mkdir PhyloProfile.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhyloProfile.buildbin-libdir PhyloProfile_1.6.6.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PhyloProfile_1.6.6.zip && rm PhyloProfile_1.6.6.tar.gz PhyloProfile_1.6.6.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  9  500k    9 47277    0     0   301k      0  0:00:01 --:--:--  0:00:01  301k
100  500k  100  500k    0     0  1477k      0 --:--:-- --:--:-- --:--:-- 1476k

install for i386

* installing *source* package 'PhyloProfile' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PhyloProfile'
    finding HTML links ... done
    calcPresSpec                            html  
    checkInputValidity                      html  
    checkNewick                             html  
    checkOmaID                              html  
    clusterDataDend                         html  
    compareMedianTaxonGroups                html  
    compareTaxonGroups                      html  
    createArchiPlot                         html  
    createGeneAgePlot                       html  
    createLongMatrix                        html  
    createPercentageDistributionData        html  
    createProfileFromOma                    html  
    createRootedTree                        html  
    createVarDistPlot                       html  
    createVariableDistributionData          html  
    createVariableDistributionDataSubset    html  
    dataCustomizedPlot                      html  
    dataFeatureTaxGroup                     html  
    dataMainPlot                            html  
    dataVarDistTaxGroup                     html  
    distributionTest                        html  
    estimateGeneAge                         html  
    fastaParser                             html  
    featureDistTaxPlot                      html  
    filterProfileData                       html  
    filteredProfile                         html  
    finalProcessedProfile                   html  
    fromInputToProfile                      html  
    fullProcessedProfile                    html  
    geneAgePlotDf                           html  
    generateSinglePlot                      html  
    getAllDomainsOma                        html  
    getAllFastaOma                          html  
    getCommonAncestor                       html  
    getCoreGene                             html  
    getDataClustering                       html  
    getDataForOneOma                        html  
    getDendrogram                           html  
    getDistanceMatrix                       html  
    getDomainFolder                         html  
    getFastaFromFasInput                    html  
    getFastaFromFile                        html  
    getFastaFromFolder                      html  
    getIDsRank                              html  
    getInputTaxaID                          html  
    getInputTaxaName                        html  
    getNameList                             html  
    getOmaDataForOneOrtholog                html  
    getOmaDomainFromURL                     html  
    getOmaMembers                           html  
    getQualColForVector                     html  
    getSelectedFastaOma                     html  
    getSelectedTaxonNames                   html  
    getTaxonomyInfo                         html  
    getTaxonomyMatrix                       html  
    getTaxonomyRanks                        html  
    gridArrangeSharedLegend                 html  
    heatmapPlotting                         html  
    highlightProfilePlot                    html  
    idList                                  html  
    mainLongRaw                             html  
    mainTaxonomyRank                        html  
    pairDomainPlotting                      html  
    parseDomainInput                        html  
    parseInfoProfile                        html  
    ppTaxonomyMatrix                        html  
    ppTree                                  html  
    processNcbiTaxonomy                     html  
    profileWithTaxonomy                     html  
    qualitativeColours                      html  
    rankIndexing                            html  
    rankList                                html  
    reduceProfile                           html  
    runPhyloProfile                         html  
    singleDomainPlotting                    html  
    sortDomains                             html  
    sortInputTaxa                           html  
    sortTaxaFromTree                        html  
    superTaxonProfile                       html  
    taxa2dist                               html  
    taxonNamesReduced                       html  
    taxonomyMatrix                          html  
    taxonomyTableCreator                    html  
    varDistTaxPlot                          html  
    wideToLong                              html  
    xmlParser                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PhyloProfile' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PhyloProfile' as PhyloProfile_1.6.6.zip
* DONE (PhyloProfile)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'PhyloProfile' successfully unpacked and MD5 sums checked