############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PathoStat_1.18.0.tar.gz && rm -rf PathoStat.buildbin-libdir && mkdir PathoStat.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PathoStat.buildbin-libdir PathoStat_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PathoStat_1.18.0.zip && rm PathoStat_1.18.0.tar.gz PathoStat_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 44 950k 44 419k 0 0 1056k 0 --:--:-- --:--:-- --:--:-- 1058k 100 950k 100 950k 0 0 1443k 0 --:--:-- --:--:-- --:--:-- 1444k install for i386 * installing *source* package 'PathoStat' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'PathoStat' finding HTML links ... done Bootstrap_LOOCV_LR_AUC html Chisq_Test_Pam html Fisher_Test_Pam html GET_PAM html LOOAUC_simple_multiple_noplot_one_df html LOOAUC_simple_multiple_one_df html PathoStat-class html TranslateIdToTaxLevel html Wilcox_Test_df html findRAfromCount html findTaxonMat html findTaxonomy html findTaxonomy300 html formatTaxTable html getShinyInput html getShinyInputCombat html getShinyInputOrig html getSignatureFromMultipleGlmnet html grepTid html loadPathoscopeReports html loadPstat html log2CPM html percent html phyloseq_to_edgeR html plotPCAPlotly html plotPCoAPlotly html pstat_data html readPathoscopeData html runPathoStat html savePstat html setShinyInput html setShinyInputCombat html setShinyInputOrig html summarizeTable html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'PathoStat' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'PathoStat' as PathoStat_1.18.0.zip * DONE (PathoStat) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'PathoStat' successfully unpacked and MD5 sums checked