############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PFP_1.0.0.tar.gz && rm -rf PFP.buildbin-libdir && mkdir PFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PFP.buildbin-libdir PFP_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PFP_1.0.0.zip && rm PFP_1.0.0.tar.gz PFP_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1191k 0 9235 0 0 109k 0 0:00:10 --:--:-- 0:00:10 108k 70 1191k 70 841k 0 0 771k 0 0:00:01 0:00:01 --:--:-- 771k 100 1191k 100 1191k 0 0 922k 0 0:00:01 0:00:01 --:--:-- 922k install for i386 * installing *source* package 'PFP' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'PFP' finding HTML links ... done PFP-class html PFP html PFPRefnet-class html PFPRefnet_hsa html PFPRefnet_mmu html PFP_score-methods html PFP_test1 html PFP_test2 html calc_PFP_score html data_std html gene_list_hsa html genes_score-methods html get_PFPRefnet html get_asso_net html get_bg_related_kegg html get_exp_cor_edges html get_pathway_info html group-methods html kegg_download html net_info-methods html net_names-methods html network-methods html pathway_info html pathway_info_hsa html pathways_score-methods html plot_PFP-methods html plot_PFPlist html rank_PFP-methods html refnet_info-methods html refnet_names-methods html result_PFP-methods html show_PFP-methods html show_net-methods html stats_test-methods html sub_PFP-methods html subnet-methods html trans_edges_id html trans_graph2PFPRefnet html finding level-2 HTML links ... done trans_xml2graph html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'PFP' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'PFP' as PFP_1.0.0.zip * DONE (PFP) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'PFP' successfully unpacked and MD5 sums checked