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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:OmnipathR.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings OmnipathR_3.0.4.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/OmnipathR.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmnipathR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OmnipathR’ version ‘3.0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmnipathR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘OmnipathR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: nichenet_signaling_network
> ### Title: Builds a NicheNet signaling network
> ### Aliases: nichenet_signaling_network
> 
> ### ** Examples
> 
> # load everything with the default parameters:
> # we don't load inBio Map due to the - hopefully
> # temporary - issues of their server
> sig_network <- nichenet_signaling_network(inbiomap = NULL)
[2021-10-14 11:01:07] [SUCCESS] [OmnipathR] Starting to build NicheNet signaling network
[2021-10-14 11:01:09] [SUCCESS] [OmnipathR] Loaded 75524 interactions from cache.
[2021-10-14 11:01:14] [SUCCESS] [OmnipathR] Harmonizome (maayanlab.cloud): loaded 6013 records from cache
[2021-10-14 11:01:14] [SUCCESS] [OmnipathR] Harmonizome (maayanlab.cloud): loaded 12161 records from cache
[2021-10-14 11:01:14] [SUCCESS] [OmnipathR] Harmonizome (maayanlab.cloud): loaded 819 records from cache
Error in extractor(version$path, list = TRUE) : 
  zip file '/var/cache/biocbuild_cache/OmnipathR/4943bf5eda7fdb771649a2148f63ecd4355cc539-1.zip' cannot be opened
Calls: nichenet_signaling_network ... archive_extractor -> archive_downloader -> extractor
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.13-bioc/meat/OmnipathR.Rcheck/00check.log’
for details.