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This page was generated on 2021-10-15 15:06:15 -0400 (Fri, 15 Oct 2021).

INSTALL results for OVESEG on tokay2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OVESEG.git to
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raw results

Package 1331/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OVESEG 1.8.0  (landing page)
Lulu Chen
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/OVESEG
git_branch: RELEASE_3_13
git_last_commit: b69abfe
git_last_commit_date: 2021-05-19 12:40:22 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: OVESEG
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OVESEG_1.8.0.tar.gz && rm -rf OVESEG.buildbin-libdir && mkdir OVESEG.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OVESEG.buildbin-libdir OVESEG_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL OVESEG_1.8.0.zip && rm OVESEG_1.8.0.tar.gz OVESEG_1.8.0.zip
StartedAt: 2021-10-14 08:53:57 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 08:55:23 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 86.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OVESEG_1.8.0.tar.gz && rm -rf OVESEG.buildbin-libdir && mkdir OVESEG.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OVESEG.buildbin-libdir OVESEG_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL OVESEG_1.8.0.zip && rm OVESEG_1.8.0.tar.gz OVESEG_1.8.0.zip
###
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##############################################################################


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100  528k  100  528k    0     0  1549k      0 --:--:-- --:--:-- --:--:-- 1553k

install for i386

* installing *source* package 'OVESEG' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pairwise_tstat_unscaled.cpp -o pairwise_tstat_unscaled.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_min.cpp -o row_min.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_which_max.cpp -o row_which_max.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c shuffle_topm.cpp -o shuffle_topm.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o OVESEG.dll tmp.def RcppExports.o pairwise_tstat_unscaled.o row_min.o row_which_max.o shuffle_topm.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/OVESEG.buildbin-libdir/00LOCK-OVESEG/00new/OVESEG/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OVESEG'
    finding HTML links ... done
    OVESEG-package                          html  
    OVESEGtest                              html  
    OVESEGtstat                             html  
    OVEtstatPermTopM                        html  
    RocheBT                                 html  
    countBT                                 html  
    nullDistri                              html  
    pairwise_tstat_unscaled                 html  
    patternDistri                           html  
    permfunc                                html  
    postProbNull                            html  
    pvalueWeightedEst                       html  
    row_min                                 html  
    row_which_max                           html  
    shuffle_topm                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OVESEG' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pairwise_tstat_unscaled.cpp -o pairwise_tstat_unscaled.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_min.cpp -o row_min.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_which_max.cpp -o row_which_max.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c shuffle_topm.cpp -o shuffle_topm.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o OVESEG.dll tmp.def RcppExports.o pairwise_tstat_unscaled.o row_min.o row_which_max.o shuffle_topm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/OVESEG.buildbin-libdir/OVESEG/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OVESEG' as OVESEG_1.8.0.zip
* DONE (OVESEG)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'OVESEG' successfully unpacked and MD5 sums checked