Shian Su
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/NanoMethViz |
| git_branch: RELEASE_3_13 |
| git_last_commit: 15c307c |
| git_last_commit_date: 2021-05-19 12:57:23 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the NanoMethViz package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NanoMethViz.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1244/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NanoMethViz 1.2.0 (landing page) Shian Su
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: NanoMethViz |
| Version: 1.2.0 |
| Command: chmod a+r NanoMethViz -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data NanoMethViz |
| StartedAt: 2021-10-14 16:05:00 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 16:06:54 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 114.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r NanoMethViz -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data NanoMethViz ### ############################################################################## ############################################################################## * checking for file 'NanoMethViz/DESCRIPTION' ... OK * preparing 'NanoMethViz': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'ImportingData.Rmd' using rmarkdown [2021-10-14 4:06:14 PM] WARNING: creating tabix file on windows requires at least twice as much memory as total size of methylation data [2021-10-14 4:06:14 PM] creating methylation table processing C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpcT9Njk/Rinst1cf454861778/NanoMethViz/sample1_nanopolish.tsv.gz... guessing file is produced by nanopolish... processing C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpcT9Njk/Rinst1cf454861778/NanoMethViz/sample2_nanopolish.tsv.gz... guessing file is produced by nanopolish... [2021-10-14 4:06:15 PM] sorting methylation table Quitting from lines 54-66 (ImportingData.Rmd) Error: processing vignette 'ImportingData.Rmd' failed with diagnostics: Cannot open file for writing: * 'C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmpq4OzP0\file1f081ff52515' --- failed re-building 'ImportingData.Rmd' --- re-building 'Introduction.Rmd' using rmarkdown --- finished re-building 'Introduction.Rmd' SUMMARY: processing the following file failed: 'ImportingData.Rmd' Error: Vignette re-building failed. Execution halted