############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/NanoMethViz_1.2.0.tar.gz && rm -rf NanoMethViz.buildbin-libdir && mkdir NanoMethViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoMethViz.buildbin-libdir NanoMethViz_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL NanoMethViz_1.2.0.zip && rm NanoMethViz_1.2.0.tar.gz NanoMethViz_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 61 1863k 61 1153k 0 0 1929k 0 --:--:-- --:--:-- --:--:-- 1929k 100 1863k 100 1863k 0 0 2268k 0 --:--:-- --:--:-- --:--:-- 2269k install for i386 * installing *source* package 'NanoMethViz' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o utils.cpp: In function 'std::__cxx11::string timestamp()': utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=] strftime(time_str, sizeof(time_str), "%F %T", localtime(&t)); ^~~~~~~ utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=] C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/NanoMethViz.buildbin-libdir/00LOCK-NanoMethViz/00new/NanoMethViz/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NanoMethViz' finding HTML links ... done NanoMethResult-class html NanoMethViz-package html bsseq_to_edger html bsseq_to_log_methy_ratio html convert_methy_format html create_tabix_file html exons html exons_to_genes html get_example_exons_mus_musculus html get_exons_homo_sapiens html get_exons_mus_musculus html load_example_nanomethresult html methy html methy_col_names html methy_to_bsseq html plot_agg_regions html plot_agg_regions_sample_grouped html plot_gene html plot_gene_heatmap html plot_grange html plot_grange_heatmap html plot_region html plot_region_heatmap html query_exons html query_methy html raw_methy_to_tabix html samples html sort_methy_file html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'NanoMethViz' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o utils.cpp: In function 'std::__cxx11::string timestamp()': utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=] strftime(time_str, sizeof(time_str), "%F %T", localtime(&t)); ^~~~~~~ utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=] C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/NanoMethViz.buildbin-libdir/NanoMethViz/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'NanoMethViz' as NanoMethViz_1.2.0.zip * DONE (NanoMethViz) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'NanoMethViz' successfully unpacked and MD5 sums checked