############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MungeSumstats_1.0.1.tar.gz && rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MungeSumstats_1.0.1.zip && rm MungeSumstats_1.0.1.tar.gz MungeSumstats_1.0.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 89684 100 89684 0 0 560k 0 --:--:-- --:--:-- --:--:-- 565k install for i386 * installing *source* package 'MungeSumstats' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MungeSumstats' finding HTML links ... done check_allele_flip html check_allele_merge html check_bi_allelic html check_chr html check_col_order html check_dup_bp html check_dup_col html check_dup_snp html check_four_step_col html check_info_score html check_miss_data html check_multi_gwas html check_n_int html check_n_num html check_no_allele html check_no_chr_bp html check_no_rs_snp html check_no_snp html check_on_ref_genome html check_row_snp html check_signed_col html check_small_p_val html check_strand_ambiguous html check_tab_delimited html check_two_step_col html check_vcf html check_vital_col html format_sumstats html load_ref_genome_data html load_snp_loc_data html raw_ALSvcf html raw_eduAttainOkbay html standardise_sumstats_column_headers_crossplatform html sumstatsColHeaders html validate_parameters html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MungeSumstats' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MungeSumstats' as MungeSumstats_1.0.1.zip * DONE (MungeSumstats) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'MungeSumstats' successfully unpacked and MD5 sums checked