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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MSstatsTMT_2.0.1.tar.gz && rm -rf MSstatsTMT.buildbin-libdir && mkdir MSstatsTMT.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMT.buildbin-libdir MSstatsTMT_2.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MSstatsTMT_2.0.1.zip && rm MSstatsTMT_2.0.1.tar.gz MSstatsTMT_2.0.1.zip
###
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 28 1524k   28  427k    0     0   952k      0  0:00:01 --:--:--  0:00:01  953k
100 1524k  100 1524k    0     0  1363k      0  0:00:01  0:00:01 --:--:-- 1364k

install for i386

* installing *source* package 'MSstatsTMT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsTMT'
    finding HTML links ... done
    MSstatsComparisonModelSingleTMT         html  
    MSstatsFitComparisonModelsTMT           html  
    MSstatsGroupComparisonOutputTMT         html  
    MSstatsGroupComparisonTMT               html  
    MSstatsModerateTTest                    html  
    MSstatsNormalizeTMT                     html  
    MSstatsPrepareForGroupComparisonTMT     html  
    MSstatsPrepareForSummarizationTMT       html  
    MSstatsSummarizationOutputTMT           html  
    MSstatsSummarizeTMT                     html  
    MSstatsTMT                              html  
    MSstatsTestSingleProteinTMT             html  
    MaxQtoMSstatsTMTFormat                  html  
    OpenMStoMSstatsTMTFormat                html  
    PDtoMSstatsTMTFormat                    html  
    SpectroMinetoMSstatsTMTFormat           html  
    annotation.mine                         html  
    annotation.mq                           html  
    annotation.pd                           html  
    dataProcessPlotsTMT                     html  
    dot-checkContrastMatrix                 html  
    dot-checkSummarizationParams            html  
    dot-countRunsWithNorm                   html  
    dot-documentFunction                    html  
    dot-getNormalizationAbundance           html  
    dot-getRunsMedian                       html  
    dot-logSum                              html  
    dot-logSummarizationParams              html  
    dot-makeContrastSingleTMT               html  
    dot-makeFactorColumnsTMT                html  
    dot-medianPolish                        html  
    dot-normalizePeptides                   html  
    dot-normalizeProteins                   html  
    dot-prepareForSummarization             html  
    dot-removeRedundantChannels             html  
    dot-summarizeMSstats                    html  
    dot-summarizeSimpleStat                 html  
    dot-summarizeTMP                        html  
    dot-summarizeTMT                        html  
    evidence                                html  
    getProcessedTMT                         html  
    getSummarizedTMT                        html  
    groupComparisonTMT                      html  
    input.pd                                html  
    proteinGroups                           html  
    proteinSummarization                    html  
    quant.pd.msstats                        html  
    raw.mine                                html  
    raw.om                                  html  
    raw.pd                                  html  
    test.pairwise                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MSstatsTMT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSstatsTMT' as MSstatsTMT_2.0.1.zip
* DONE (MSstatsTMT)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'MSstatsTMT' successfully unpacked and MD5 sums checked