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### Running command:
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###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MSstatsPTM_1.2.4.tar.gz && rm -rf MSstatsPTM.buildbin-libdir && mkdir MSstatsPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsPTM.buildbin-libdir MSstatsPTM_1.2.4.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MSstatsPTM_1.2.4.zip && rm MSstatsPTM_1.2.4.tar.gz MSstatsPTM_1.2.4.zip
###
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100 7307k  100 7307k    0     0  1872k      0  0:00:03  0:00:03 --:--:-- 1872k

install for i386

* installing *source* package 'MSstatsPTM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_adjustment.cpp -o model_adjustment.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsPTM.dll tmp.def RcppExports.o model_adjustment.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/MSstatsPTM.buildbin-libdir/00LOCK-MSstatsPTM/00new/MSstatsPTM/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsPTM'
    finding HTML links ... done
    MSstatsPTM                              html  
    MaxQtoMSstatsPTMFormat                  html  
    ProgenesistoMSstatsPTMFormat            html  
    SpectronauttoMSstatsPTMFormat           html  
    annotSite                               html  
    dataProcessPlotsPTM                     html  
    dataSummarizationPTM                    html  
    dataSummarizationPTM_TMT                html  
    groupComparisonPTM                      html  
    groupComparisonPlotsPTM                 html  
    locateMod                               html  
    locatePTM                               html  
    raw.input                               html  
    raw.input.tmt                           html  
    summary.data                            html  
    summary.data.tmt                        html  
    tidyFasta                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MSstatsPTM' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_adjustment.cpp -o model_adjustment.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsPTM.dll tmp.def RcppExports.o model_adjustment.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/MSstatsPTM.buildbin-libdir/MSstatsPTM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSstatsPTM' as MSstatsPTM_1.2.4.zip
* DONE (MSstatsPTM)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'MSstatsPTM' successfully unpacked and MD5 sums checked