Mattia Pelizzola
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/MEDME |
| git_branch: RELEASE_3_13 |
| git_last_commit: c435a94 |
| git_last_commit_date: 2021-05-19 11:41:43 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:10 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the MEDME package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MEDME.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1065/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MEDME 1.52.0 (landing page) Mattia Pelizzola
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: MEDME |
| Version: 1.52.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MEDME_1.52.0.tar.gz && rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEDME.buildbin-libdir MEDME_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MEDME_1.52.0.zip && rm MEDME_1.52.0.tar.gz MEDME_1.52.0.zip |
| StartedAt: 2021-10-14 10:05:49 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:06:55 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 66.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MEDME_1.52.0.tar.gz && rm -rf MEDME.buildbin-libdir && mkdir MEDME.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEDME.buildbin-libdir MEDME_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MEDME_1.52.0.zip && rm MEDME_1.52.0.tar.gz MEDME_1.52.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 266k 1 3839 0 0 46153 0 0:00:05 --:--:-- 0:00:05 46253
100 266k 100 266k 0 0 963k 0 --:--:-- --:--:-- --:--:-- 965k
install for i386
* installing *source* package 'MEDME' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:78:12: warning: 'weight' may be used uninitialized in this function [-Wmaybe-uninitialized]
weightSum = weightSum + weight;
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
MEDMEweight.c:91:42: warning: 'Max' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(AMSfinal[i] > Max) {AMSfinal[i] = Max;}
~~~~~~~~~~~~^~~~~
MEDMEweight.c:92:42: warning: 'Min' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
~~~~~~~~~~~~^~~~~
MEDMEweight.c:90:33: warning: 'E' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
^~~~~~~~
MEDMEweight.c:90:47: warning: 'D' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
~~~^~~~~~~
MEDMEweight.c:90:63: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
~~~~~~^~~~
MEDMEweight.c:90:33: warning: 'B' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
^~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o MEDME.dll tmp.def MEDMEweight.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/MEDME.buildbin-libdir/00LOCK-MEDME/00new/MEDME/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MEDME'
finding HTML links ... done
CGcount html
MEDME html
MEDME.predict html
MEDME.readFiles html
MEDME.writeFiles html
MEDMEset-class html
smooth html
testMEDMEset html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MEDME' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c MEDMEweight.c -o MEDMEweight.o
MEDMEweight.c: In function 'MEDMEweight':
MEDMEweight.c:78:12: warning: 'weight' may be used uninitialized in this function [-Wmaybe-uninitialized]
weightSum = weightSum + weight;
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
MEDMEweight.c:91:42: warning: 'Max' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(AMSfinal[i] > Max) {AMSfinal[i] = Max;}
~~~~~~~~~~~~^~~~~
MEDMEweight.c:92:42: warning: 'Min' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(AMSfinal[i] < Min) {AMSfinal[i] = Min;}
~~~~~~~~~~~~^~~~~
MEDMEweight.c:90:33: warning: 'E' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
^~~~~~~~
MEDMEweight.c:90:47: warning: 'D' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
~~~^~~~~~~
MEDMEweight.c:90:63: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
~~~~~~^~~~
MEDMEweight.c:90:33: warning: 'B' may be used uninitialized in this function [-Wmaybe-uninitialized]
AMSfinal[i] = pow(2, pow( pow(E,B) * (D - Mlim) / (Mlim - C), 1/B));
^~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o MEDME.dll tmp.def MEDMEweight.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/MEDME.buildbin-libdir/MEDME/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDME' as MEDME_1.52.0.zip
* DONE (MEDME)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'MEDME' successfully unpacked and MD5 sums checked