############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/LymphoSeq_1.20.0.tar.gz && rm -rf LymphoSeq.buildbin-libdir && mkdir LymphoSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LymphoSeq.buildbin-libdir LymphoSeq_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL LymphoSeq_1.20.0.zip && rm LymphoSeq_1.20.0.tar.gz LymphoSeq_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 710k 100 710k 0 0 1884k 0 --:--:-- --:--:-- --:--:-- 1890k install for i386 * installing *source* package 'LymphoSeq' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'LymphoSeq' finding HTML links ... done alignSeq html bhattacharyyaCoefficient html bhattacharyyaMatrix html chordDiagramVDJ html clonalRelatedness html clonality html cloneTrack html commonSeqs html commonSeqsBar html commonSeqsPlot html commonSeqsVenn html differentialAbundance html exportFasta html geneFreq html lorenzCurve html mergeFiles html pairwisePlot html phyloTree html productive html productiveSeq html readImmunoSeq html removeSeq html searchPublished html searchSeq html seqMatrix html similarityMatrix html similarityScore html topFreq html topSeqs html topSeqsPlot html uniqueSeqs html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'LymphoSeq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'LymphoSeq' as LymphoSeq_1.20.0.zip * DONE (LymphoSeq) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'LymphoSeq' successfully unpacked and MD5 sums checked