############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/InPAS_2.0.0.tar.gz && rm -rf InPAS.buildbin-libdir && mkdir InPAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InPAS.buildbin-libdir InPAS_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL InPAS_2.0.0.zip && rm InPAS_2.0.0.tar.gz InPAS_2.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1080k 0 3835 0 0 47892 0 0:00:23 --:--:-- 0:00:23 47937 100 1080k 100 1080k 0 0 1532k 0 --:--:-- --:--:-- --:--:-- 1532k install for i386 * installing *source* package 'InPAS' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'InPAS' finding HTML links ... done InPAS html UTR3eSet-class html finding level-2 HTML links ... done adjust_distalCPs html adjust_proximalCPs html adjust_proximalCPsByNBC html adjust_proximalCPsByPWM html assemble_allCov html assign_feature html compensation html extract_UTR3Anno html fft.smooth html filter_testOut html find_segmentationSites html find_valley html fix_dbLockError html gcComp html gcContents html get_PAscore html get_PAscore2 html get_UTR3CDS html get_UTR3TotalCov html get_UTR3eSet html get_UTR3region html get_depthWeight html get_regionCov html get_seqLen html get_ssRleCov html get_totalCov html get_usage4plot html get_zScoreCutoff html mapComp html parse_TxDb html plot_utr3Usage html polish_CPs html remove_convergentUTR3s html run_coverageQC html run_fisherExactTest html run_limmaAnalysis html run_singleGroupAnalysis html run_singleSampleAnalysis html search_CPs html search_distalCPs html search_proximalCPs html setup_CPsSearch html setup_GSEA html setup_sqlitedb html test_dPDUI html trim_seqnames html utr3.mm10 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'InPAS' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'InPAS' as InPAS_2.0.0.zip * DONE (InPAS) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'InPAS' successfully unpacked and MD5 sums checked