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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings HiCBricks_1.10.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/HiCBricks.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HiCBricks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HiCBricks' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCBricks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                       user system elapsed
Brick_vizart_plot_heatmap              3.64   0.55    5.80
Brick_export_to_sparse                 3.55   0.61    5.11
BrickContainer_unlink_resolution       3.05   0.45    5.73
Brick_get_matrix_within_coords         2.82   0.64    6.17
Brick_call_compartments                2.38   0.58    6.08
Brick_matrix_exists                    1.85   0.75    6.89
Brick_get_matrix                       2.00   0.57   13.92
BrickContainer_change_output_directory 1.48   0.32    6.11
BrickContainer_get_path_to_file        1.48   0.24    5.55
BrickContainer_list_resolutions        1.35   0.31    6.96
BrickContainer_list_chromosomes        1.39   0.23    8.41
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
Brick_export_to_sparse         4.00   0.71    5.48
Brick_get_matrix_within_coords 2.66   0.67    7.55
Brick_fetch_row_vector         2.37   0.72    5.09
Brick_get_entire_matrix        2.08   0.61    6.93
Brick_get_vector_values        2.14   0.53   12.96
Brick_get_matrix               1.98   0.60    6.72
Brick_get_matrix_mcols         1.86   0.58    6.05
Brick_matrix_isdone            1.95   0.47    8.45
Brick_list_rangekeys           1.49   0.27    7.88
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK